Members


Principal Investigator



image of Biotechnology

Patrick Lee

Professor

Patrick Lee is a Professor in the School of Energy and Environment, specializing in chemical engineering, environmental engineering, and environmental microbiology. He embarked on his independent career in 2011, following the completion of his PhD and postdoctoral training at the University of California, Berkeley. From 2017 to 2021, he served as the Associate Dean for Undergraduate Studies in the School.

With his research group, Prof. Lee aims to address biologically-related energy and environmental challenges, working at the interface of fundamental and applied sciences. While his primary interest lies in unraveling the intricacies of microbiology at the molecular and cellular levels, he is equally dedicated to applying these fundamental findings to engineering applications for solving real-world problems.

Prof. Lee's research group currently focuses on the study of microbes in indoor and outdoor air, diverse environmental systems, as well as the harnessing of bacteria and their molecular components to produce renewable biobased chemicals effectively. The group possesses expertise in wet-lab and computational techniques for bacterial manipulation and modeling. In addition to investigating individual bacteria, they are also interested in exploring complex microbial communities. Through their research and educational pursuits, Prof. Lee and his team strive to pave the way for a healthier, greener, and more sustainable future for all.



Education

  • Postdoctoral Researcher, Environmental Engineering, University of California, Berkeley, 2008 – 2010
  • Ph.D., Environmental Engineering, University of California, Berkeley, 2007
  • M.S., Environmental Engineering, University of California, Berkeley, 2002
  • B.S., Chemical Engineering, Queen's University, Canada, 2001

Awards

  • School Teaching Excellence Award, City University of Hong Kong, 2023
  • Outstanding Supervisor Award, City University of Hong Kong, 2018
  • Special Recognition Award, World Cultural Council (WCC), 2018
  • Achievement Award, Bioenergy Society of Singapore, 2018
  • The President’s Awards, City University of Hong Kong, 2016 & 2020
  • Natural Sciences and Engineering Research Council Postdoctoral Fellowship, Canada, 2009
  • American Society for Microbiology Student Travel Award, 2005

Postdoctoral Fellow

  • Chee Kent Lim (PhD, Jul 2016 – present)
  • Fengyu Qin (PhD, Nov 2019 – present)
  • Zhiyong Shen (PhD, Sep 2021 – present)
  • Danli Luo (PhD, Feb 2022 – present)
  • Jinjin Yu (PhD, Oct 2022 – present)
  • Hoa Thi Quynh Le (PhD, Jun 2023 – present)
  • Siyu Zhang (PhD, Mar 2024 – present)

PhD Student

  • Wing Lam Chan (Sep 2020 – present)
  • Shicong Du (Jul 2021 – present)
  • Yingyu Bao (Sep 2021 – present)
  • Yanhao Miao (Aug 2022 – present)
  • Huaxin Lei (Sep 2022 – present)
  • Chengyue Li (Sep 2023 – present)
  • Xizhuo Wang (Sep 2024 – present)
  • Congyu Li (Sep 2024 – present)

Alumni

  • Le Anh Kiet Ho (PhD Student, Sep 2019 – Aug 2024)
  • Suzhen Huang (PhD Student, Sep 2019 – Aug 2024)
  • Justin Lee (Research Assistant, Sep 2018 – Dec 2022; now a staff at Hong Kong Applied Science and Technology Research Institute)
  • Jinjin Yu (PhD Student, Sep 2017 – Aug 2022; now a Postdoctoral Fellow at the City University of Hong Kong)
  • Marcus Leung (Postdoctoral Fellow, PhD, May 2013 – Oct 2021; now a Senior Bioinformatician at Basecamp Research, UK)
  • Peihua Wang (Co-supervised PhD student at University of Hong Kong with Prof. Yuguo Li, Sep 2016 – Aug 2021; now a Postdoctoral Fellow at Columbia University, USA)
  • Zaiqiang Wu (Postdoctoral Fellow, PhD, Apr 2020 – Nov 2021)
  • You Zhou (PhD Student, Sep 2016 – Aug 2021; now an Assistant Professor at the Shenyang Ligong University)
  • Juan Villada (PhD Student, Sep 2016 – Jan 2021; now a Postdoctoral Fellow at the Joint Genome Institute, USA)
  • Xinzhao Tong (PhD Student, Sep 2015 – Aug 2019; now an Assistant Professor at the Xi'an Jiaotong-Liverpool University)
  • Hedwig Cheung (MPhil Student, Sep 2016 – Aug 2019; now a staff at the Hong Kong Productivity Council)
  • Yangyang Jia (PhD Student, Sep 2013 – Oct 2017; now a Staff Scientist at the Beijing Genomics Institute)
  • Mingwei Cai (PhD Student, Sep 2013 – May 2017; now a Staff Scientist at the Institute of Chemical Biology, Shenzhen Bay Laboratory)
  • Hongyuan Lu (PhD Student, Jan 2012 – Oct 2016; now a Postdoctoral Researcher at the University of Texas, Austin)
  • David Wilkins (Postdoctoral Fellow, Ph.D., UNSW, Dec 2013 – Sep 2016; now a medical doctor in Adelaide, Australia)
  • S K Ng (Postdoctoral Fellow, Ph.D., HKUST, Jul 2014 – Sep 2016)
  • Jiapeng Chen (Research Assistant, Aug 2013 – Jul 2014; now a Postdoctoral Researcher at the Memorial Sloan Kettering Cancer Center)
  • Subramanya Rao (Postdoctoral Fellow, Jan 2013 – Jun 2014; now a Staff Scientist at VastBiome)
  • Zhiyong Shen (Research Assistant, Oct 2011 – Apr 2014; now a Postdoctoral Fellow at the City University of Hong Kong)
  • Xiaoying Xu (Research Assistant, Oct 2012 – Apr 2014; now a Postdoctoral Researcher at the Tianjin Medical University)
  • Xiaoying Lv (Postdoctoral Fellow, Jul 2011 – Sep 2012; now an Assistant Professor at the Technological and Higher Education Institute of Hong Kong)
  • Chris Ng (Research Assistant, Sep 2011 – May 2012; now a staff at The Hong Kong and China Gas Company)